J4_8R3V_003

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R3V_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2106

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8R3V|1|72|C|601
8R3V|1|72|A|602
8R3V|1|72|A|603
8R3V|1|72|G|604
*
8R3V|1|72|C|624
8R3V|1|72|G|625
8R3V|1|72|A|626
8R3V|1|72|A|627
8R3V|1|72|G|628
*
8R3V|1|72|C|635
8R3V|1|72|G|636
8R3V|1|72|A|637
8R3V|1|72|G|638
*
8R3V|1|72|C|650
8R3V|1|72|G|651
8R3V|1|72|U|652
8R3V|1|72|U|653
8R3V|1|72|A|654
8R3V|1|72|A|655
8R3V|1|72|G|656

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 62

50S ribosomal protein L35