J4_8R3V_009

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8R3V|1|72|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R3V_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1004

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8R3V|1|72|C|1833
8R3V|1|72|U|1834
8R3V|1|72|2MG|1835
*
8R3V|1|72|C|1905
8R3V|1|72|G|1906
*
8R3V|1|72|C|1924
8R3V|1|72|C|1925
8R3V|1|72|U|1926
8R3V|1|72|A|1927
8R3V|1|72|A|1928
8R3V|1|72|G|1929
8R3V|1|72|G|1930
8R3V|1|72|U|1931
8R3V|1|72|A|1932
8R3V|1|72|G|1933
*
8R3V|1|72|C|1967
8R3V|1|72|G|1968
8R3V|1|72|A|1969
8R3V|1|72|A|1970
8R3V|1|72|U|1971
8R3V|1|72|G|1972

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain W

Transfer RNA; tRNA

Chain b2

50S ribosomal protein L2