J4_8R3V_018
3D structure
- PDB id
- 8R3V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (non-rotated disome interface)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- G(4SU)AG*CAC*GGU(G7M)UUG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8R3V|1|W|4SU|8, 8R3V|1|W|U|47, 8R3V|1|W|U|48
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8R3V_018 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.1957
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8R3V|1|W|G|7
8R3V|1|W|4SU|8
8R3V|1|W|A|9
8R3V|1|W|G|10
*
8R3V|1|W|C|25
8R3V|1|W|A|26
8R3V|1|W|C|27
*
8R3V|1|W|G|43
8R3V|1|W|G|44
8R3V|1|W|U|45
8R3V|1|W|G7M|46
8R3V|1|W|U|47
8R3V|1|W|U|48
8R3V|1|W|G|49
*
8R3V|1|W|C|65
8R3V|1|W|C|66
Current chains
- Chain W
- tRNA-Trp (P-site)
Nearby chains
- Chain 72
- Large subunit ribosomal RNA; LSU rRNA
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain M2
- Small ribosomal subunit protein uS13
- Chain h2
- 50S ribosomal protein L16
Coloring options: