J4_8R3V_019

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

G(4SU)AG*UAC*GCG(G7M)(3AU)CG*CC

Length

16 nucleotides

Bulged bases

8R3V|1|X2|4SU|8, 8R3V|1|X2|3AU|48, 8R3V|1|X2|C|49

QA status

Modified nucleotides: 4SU, G7M, 3AU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R3V_019 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.2697

The information below is about J4_6CFJ_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

8R3V|1|X2|G|7
8R3V|1|X2|4SU|8
8R3V|1|X2|A|9
8R3V|1|X2|G|10
*
8R3V|1|X2|U|26
8R3V|1|X2|A|27
8R3V|1|X2|C|28
*
8R3V|1|X2|G|44
8R3V|1|X2|C|45
8R3V|1|X2|G|46
8R3V|1|X2|G7M|47
8R3V|1|X2|3AU|48
8R3V|1|X2|C|49
8R3V|1|X2|G|50
*
8R3V|1|X2|C|66
8R3V|1|X2|C|67

Current chains

Chain X2

tRNA-Arg (E-site)

Nearby chains

Chain G2

30S ribosomal protein S7

Chain g2

50S ribosomal protein L33