J4_8R55_007

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UGAAG*CGCC*GGA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R55_007 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.1092

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8R55|1|X|U|340
8R55|1|X|G|341
8R55|1|X|A|342
8R55|1|X|A|343
8R55|1|X|G|344
*
8R55|1|X|C|360
8R55|1|X|G|361
8R55|1|X|C|362
8R55|1|X|C|363
*
8R55|1|X|G|367
8R55|1|X|G|368
8R55|1|X|A|369
*
8R55|1|X|U|381
8R55|1|X|G|382
8R55|1|X|U|383
8R55|1|X|A|384
8R55|1|X|G|385

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24