J4_8R55_008

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CAAG*CGCAG*CGAG*CGCAUGAG

Length

21 nucleotides

Bulged bases

8R55|1|X|G|701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R55_008 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5788

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8R55|1|X|C|645
8R55|1|X|A|646
8R55|1|X|A|647
8R55|1|X|G|648
*
8R55|1|X|C|670
8R55|1|X|G|671
8R55|1|X|C|672
8R55|1|X|A|673
8R55|1|X|G|674
*
8R55|1|X|C|681
8R55|1|X|G|682
8R55|1|X|A|683
8R55|1|X|G|684
*
8R55|1|X|C|696
8R55|1|X|G|697
8R55|1|X|C|698
8R55|1|X|A|699
8R55|1|X|U|700
8R55|1|X|G|701
8R55|1|X|A|702
8R55|1|X|G|703

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain b

Large ribosomal subunit protein uL4

Chain i

50S ribosomal protein L15