J4_8R55_009

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CGAAAG*CC*GAUC*GG

Length

14 nucleotides

Bulged bases

8R55|1|X|G|1311, 8R55|1|X|A|1312, 8R55|1|X|U|1692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R55_009 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.159

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8R55|1|X|C|1310
8R55|1|X|G|1311
8R55|1|X|A|1312
8R55|1|X|A|1313
8R55|1|X|A|1314
8R55|1|X|G|1315
*
8R55|1|X|C|1333
8R55|1|X|C|1334
*
8R55|1|X|G|1690
8R55|1|X|A|1691
8R55|1|X|U|1692
8R55|1|X|C|1693
*
8R55|1|X|G|2038
8R55|1|X|G|2039

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 0

50S ribosomal protein L32

Chain k

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22