J4_8R55_014

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

8R55|1|X|A|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R55_014 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0977

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8R55|1|X|C|1862
8R55|1|X|U|1863
8R55|1|X|G|1864
*
8R55|1|X|C|1934
8R55|1|X|G|1935
*
8R55|1|X|C|1953
8R55|1|X|C|1954
8R55|1|X|U|1955
8R55|1|X|A|1956
8R55|1|X|A|1957
8R55|1|X|G|1958
8R55|1|X|G|1959
8R55|1|X|U|1960
8R55|1|X|A|1961
8R55|1|X|G|1962
*
8R55|1|X|C|1996
8R55|1|X|G|1997
8R55|1|X|A|1998
8R55|1|X|A|1999
8R55|1|X|A|2000
8R55|1|X|G|2001

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain U

Transfer RNA; tRNA

Chain Z

Large ribosomal subunit protein uL2