J4_8R6C_002

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8R6C|1|A|C|183, 8R6C|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R6C_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0818

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8R6C|1|A|G|142
8R6C|1|A|A|143
8R6C|1|A|G|144
*
8R6C|1|A|C|178
8R6C|1|A|A|179
8R6C|1|A|U|180
8R6C|1|A|A|181
8R6C|1|A|A|182
8R6C|1|A|C|183
8R6C|1|A|G|184
*
8R6C|1|A|C|193
8R6C|1|A|C|194
8R6C|1|A|A|195
8R6C|1|A|A|196
8R6C|1|A|A|197
8R6C|1|A|G|198
*
8R6C|1|A|U|219
8R6C|1|A|G|220
8R6C|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20