J4_8R6C_008

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8R6C|1|a|G|1271, 8R6C|1|a|A|1272, 8R6C|1|a|U|1273, 8R6C|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R6C_008 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0475

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8R6C|1|a|C|1270
8R6C|1|a|G|1271
8R6C|1|a|A|1272
8R6C|1|a|U|1273
8R6C|1|a|A|1274
8R6C|1|a|A|1275
8R6C|1|a|A|1276
*
8R6C|1|a|U|1294
8R6C|1|a|C|1295
*
8R6C|1|a|G|1645
8R6C|1|a|C|1646
8R6C|1|a|U|1647
8R6C|1|a|U|1648
*
8R6C|1|a|A|2009
8R6C|1|a|G|2010

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32