J4_8R8M_002

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8R8M|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R8M_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0883

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8R8M|1|A|G|142
8R8M|1|A|A|143
8R8M|1|A|G|144
*
8R8M|1|A|C|178
8R8M|1|A|A|179
8R8M|1|A|U|180
8R8M|1|A|A|181
8R8M|1|A|A|182
8R8M|1|A|C|183
8R8M|1|A|G|184
*
8R8M|1|A|C|193
8R8M|1|A|C|194
8R8M|1|A|A|195
8R8M|1|A|A|196
8R8M|1|A|A|197
8R8M|1|A|G|198
*
8R8M|1|A|U|219
8R8M|1|A|G|220
8R8M|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20