J4_8R8M_004
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUAG*CA*UGGUCG*CA
- Length
- 14 nucleotides
- Bulged bases
- 8R8M|1|Y|U|8, 8R8M|1|Y|U|47, 8R8M|1|Y|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8R8M_004 not in the Motif Atlas
- Homologous match to J4_4QEI_001
- Geometric discrepancy: 0.3579
- The information below is about J4_4QEI_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_72305.5
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8R8M|1|Y|U|7
8R8M|1|Y|U|8
8R8M|1|Y|A|9
8R8M|1|Y|G|10
*
8R8M|1|Y|C|25
8R8M|1|Y|A|26
*
8R8M|1|Y|U|44
8R8M|1|Y|G|45
8R8M|1|Y|G|46
8R8M|1|Y|U|47
8R8M|1|Y|C|48
8R8M|1|Y|G|49
*
8R8M|1|Y|C|65
8R8M|1|Y|A|66
Current chains
- Chain Y
- Isoleucine-tRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: