J4_8R8M_005

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8R8M|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R8M_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1178

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8R8M|1|a|C|268
8R8M|1|a|C|269
*
8R8M|1|a|G|370
8R8M|1|a|A|371
8R8M|1|a|G|372
8R8M|1|a|U|373
8R8M|1|a|A|374
8R8M|1|a|G|375
*
8R8M|1|a|U|399
8R8M|1|a|G|400
8R8M|1|a|A|401
8R8M|1|a|A|402
8R8M|1|a|U|403
8R8M|1|a|A|404
8R8M|1|a|U|405
8R8M|1|a|G|406
*
8R8M|1|a|C|421
8R8M|1|a|A|422
8R8M|1|a|A|423
8R8M|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28