J4_8RCL_009

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8RCL|1|72|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCL_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1054

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8RCL|1|72|C|1833
8RCL|1|72|U|1834
8RCL|1|72|2MG|1835
*
8RCL|1|72|C|1905
8RCL|1|72|G|1906
*
8RCL|1|72|C|1924
8RCL|1|72|C|1925
8RCL|1|72|U|1926
8RCL|1|72|A|1927
8RCL|1|72|A|1928
8RCL|1|72|G|1929
8RCL|1|72|G|1930
8RCL|1|72|U|1931
8RCL|1|72|A|1932
8RCL|1|72|G|1933
*
8RCL|1|72|C|1967
8RCL|1|72|G|1968
8RCL|1|72|A|1969
8RCL|1|72|A|1970
8RCL|1|72|U|1971
8RCL|1|72|G|1972

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain W

Transfer RNA; tRNA

Chain b2

50S ribosomal protein L2