J4_8RCL_015

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8RCL|1|A2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCL_015 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3089

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RCL|1|A2|G|115
8RCL|1|A2|A|116
8RCL|1|A2|G|117
8RCL|1|A2|U|118
8RCL|1|A2|A|119
8RCL|1|A2|A|120
8RCL|1|A2|U|121
8RCL|1|A2|G|122
*
8RCL|1|A2|U|239
8RCL|1|A2|G|240
*
8RCL|1|A2|C|286
8RCL|1|A2|U|287
8RCL|1|A2|A|288
8RCL|1|A2|G|289
*
8RCL|1|A2|C|311
8RCL|1|A2|C|312

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain Q2

Small ribosomal subunit protein uS17