J4_8RCM_001

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8RCM|1|72|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCM_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1441

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8RCM|1|72|C|268
8RCM|1|72|C|269
*
8RCM|1|72|G|370
8RCM|1|72|A|371
8RCM|1|72|G|372
8RCM|1|72|U|373
8RCM|1|72|A|374
8RCM|1|72|G|375
*
8RCM|1|72|U|399
8RCM|1|72|G|400
8RCM|1|72|A|401
8RCM|1|72|A|402
8RCM|1|72|U|403
8RCM|1|72|A|404
8RCM|1|72|U|405
8RCM|1|72|G|406
*
8RCM|1|72|C|421
8RCM|1|72|A|422
8RCM|1|72|A|423
8RCM|1|72|G|424

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L28

Chain i2

50S ribosomal protein L9