J4_8RCM_022

3D structure

PDB id

8RCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8RCM|1|A2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCM_022 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3103

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RCM|1|A2|G|115
8RCM|1|A2|A|116
8RCM|1|A2|G|117
8RCM|1|A2|U|118
8RCM|1|A2|A|119
8RCM|1|A2|A|120
8RCM|1|A2|U|121
8RCM|1|A2|G|122
*
8RCM|1|A2|U|239
8RCM|1|A2|G|240
*
8RCM|1|A2|C|286
8RCM|1|A2|U|287
8RCM|1|A2|A|288
8RCM|1|A2|G|289
*
8RCM|1|A2|C|311
8RCM|1|A2|C|312

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain Q2

Small ribosomal subunit protein uS17