J4_8RCS_004

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8RCS|1|72|G|1271, 8RCS|1|72|A|1272, 8RCS|1|72|U|1273, 8RCS|1|72|A|1275, 8RCS|1|72|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCS_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0847

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8RCS|1|72|C|1270
8RCS|1|72|G|1271
8RCS|1|72|A|1272
8RCS|1|72|U|1273
8RCS|1|72|A|1274
8RCS|1|72|A|1275
8RCS|1|72|A|1276
*
8RCS|1|72|U|1294
8RCS|1|72|C|1295
*
8RCS|1|72|G|1645
8RCS|1|72|C|1646
8RCS|1|72|U|1647
8RCS|1|72|U|1648
*
8RCS|1|72|A|2009
8RCS|1|72|G|2010

Current chains

Chain 72

23S ribosomal RNA

Nearby chains