J4_8RCS_020

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8RCS|1|A2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCS_020 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3238

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RCS|1|A2|G|115
8RCS|1|A2|A|116
8RCS|1|A2|G|117
8RCS|1|A2|U|118
8RCS|1|A2|A|119
8RCS|1|A2|A|120
8RCS|1|A2|U|121
8RCS|1|A2|G|122
*
8RCS|1|A2|U|239
8RCS|1|A2|G|240
*
8RCS|1|A2|C|286
8RCS|1|A2|U|287
8RCS|1|A2|A|288
8RCS|1|A2|G|289
*
8RCS|1|A2|C|311
8RCS|1|A2|C|312

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain Q2

Small ribosomal subunit protein uS17