J4_8RCT_001

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8RCT|1|72|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCT_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1519

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8RCT|1|72|C|268
8RCT|1|72|C|269
*
8RCT|1|72|G|370
8RCT|1|72|A|371
8RCT|1|72|G|372
8RCT|1|72|U|373
8RCT|1|72|A|374
8RCT|1|72|G|375
*
8RCT|1|72|U|399
8RCT|1|72|G|400
8RCT|1|72|A|401
8RCT|1|72|A|402
8RCT|1|72|U|403
8RCT|1|72|A|404
8RCT|1|72|U|405
8RCT|1|72|G|406
*
8RCT|1|72|C|421
8RCT|1|72|A|422
8RCT|1|72|A|423
8RCT|1|72|G|424

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L28

Chain i2

50S ribosomal protein L9