J4_8RCT_004

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8RCT|1|72|G|1271, 8RCT|1|72|A|1272, 8RCT|1|72|U|1273, 8RCT|1|72|A|1275, 8RCT|1|72|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCT_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0851

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8RCT|1|72|C|1270
8RCT|1|72|G|1271
8RCT|1|72|A|1272
8RCT|1|72|U|1273
8RCT|1|72|A|1274
8RCT|1|72|A|1275
8RCT|1|72|A|1276
*
8RCT|1|72|U|1294
8RCT|1|72|C|1295
*
8RCT|1|72|G|1645
8RCT|1|72|C|1646
8RCT|1|72|U|1647
8RCT|1|72|U|1648
*
8RCT|1|72|A|2009
8RCT|1|72|G|2010

Current chains

Chain 72

23S ribosomal RNA

Nearby chains