3D structure

PDB id
8RCT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli paused disome complex (Rotated disome interface class 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.32 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
8RCT|1|A1|C|183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8RCT_013 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.2225
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

8RCT|1|A1|G|142
8RCT|1|A1|A|143
8RCT|1|A1|G|144
*
8RCT|1|A1|C|178
8RCT|1|A1|A|179
8RCT|1|A1|U|180
8RCT|1|A1|A|181
8RCT|1|A1|A|182
8RCT|1|A1|C|183
8RCT|1|A1|G|184
*
8RCT|1|A1|C|193
8RCT|1|A1|C|194
8RCT|1|A1|A|195
8RCT|1|A1|A|196
8RCT|1|A1|A|197
8RCT|1|A1|G|198
*
8RCT|1|A1|U|219
8RCT|1|A1|G|220
8RCT|1|A1|C|221

Current chains

Chain A1
16S ribosomal RNA

Nearby chains

Chain T1
Small ribosomal subunit protein bS20

Coloring options:


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