J4_8RCT_020

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8RCT|1|A2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RCT_020 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3238

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RCT|1|A2|G|115
8RCT|1|A2|A|116
8RCT|1|A2|G|117
8RCT|1|A2|U|118
8RCT|1|A2|A|119
8RCT|1|A2|A|120
8RCT|1|A2|U|121
8RCT|1|A2|G|122
*
8RCT|1|A2|U|239
8RCT|1|A2|G|240
*
8RCT|1|A2|C|286
8RCT|1|A2|U|287
8RCT|1|A2|A|288
8RCT|1|A2|G|289
*
8RCT|1|A2|C|311
8RCT|1|A2|C|312

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain Q2

Small ribosomal subunit protein uS17