J4_8RDV_005

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8RDV|1|Z2|G|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RDV_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0581

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RDV|1|Z2|G|1294
8RDV|1|Z2|G|1295
8RDV|1|Z2|U|1296
8RDV|1|Z2|U|1297
8RDV|1|Z2|C|1298
*
8RDV|1|Z2|G|1322
8RDV|1|Z2|G|1323
8RDV|1|Z2|U|1324
8RDV|1|Z2|G|1325
8RDV|1|Z2|A|1326
8RDV|1|Z2|G|1327
*
8RDV|1|Z2|C|1388
8RDV|1|Z2|U|1389
*
8RDV|1|Z2|A|1585
8RDV|1|Z2|A|1586
8RDV|1|Z2|U|1587
8RDV|1|Z2|C|1588
8RDV|1|Z2|G|1589
8RDV|1|Z2|U|1590
8RDV|1|Z2|A|1591
8RDV|1|Z2|C|1592

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34

Chain Sn

Large ribosomal subunit protein uL23