J4_8RDV_009
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|1957
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RDV_009 not in the Motif Atlas
- Homologous match to J4_5J7L_026
- Geometric discrepancy: 0.1368
- The information below is about J4_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RDV|1|Z2|C|1819
8RDV|1|Z2|U|1820
8RDV|1|Z2|G|1821
*
8RDV|1|Z2|C|1891
8RDV|1|Z2|G|1892
*
8RDV|1|Z2|C|1910
8RDV|1|Z2|C|1911
8RDV|1|Z2|U|1912
8RDV|1|Z2|A|1913
8RDV|1|Z2|A|1914
8RDV|1|Z2|G|1915
8RDV|1|Z2|G|1916
8RDV|1|Z2|U|1917
8RDV|1|Z2|A|1918
8RDV|1|Z2|G|1919
*
8RDV|1|Z2|C|1953
8RDV|1|Z2|G|1954
8RDV|1|Z2|A|1955
8RDV|1|Z2|A|1956
8RDV|1|Z2|U|1957
8RDV|1|Z2|G|1958
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Cl
- Large ribosomal subunit protein uL2
- Chain V
- Heterogenous tRNA
- Chain iN
- Small subunit ribosomal RNA; SSU rRNA
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