J4_8RDV_012

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGUAAUAC*GUC*GUAG*CC

Length

18 nucleotides

Bulged bases

8RDV|1|iN|U|166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDV|1|iN|G|160
8RDV|1|iN|A|161
8RDV|1|iN|G|162
8RDV|1|iN|U|163
8RDV|1|iN|A|164
8RDV|1|iN|A|165
8RDV|1|iN|U|166
8RDV|1|iN|A|167
8RDV|1|iN|C|168
*
8RDV|1|iN|G|281
8RDV|1|iN|U|282
8RDV|1|iN|C|283
*
8RDV|1|iN|G|329
8RDV|1|iN|U|330
8RDV|1|iN|A|331
8RDV|1|iN|G|332
*
8RDV|1|iN|C|354
8RDV|1|iN|C|355

Current chains

Chain iN

16S rRNA

Nearby chains

Chain L6

Small ribosomal subunit protein uS12

Chain Pj

Small ribosomal subunit protein bS16

Chain QZ

Small ribosomal subunit protein uS17