J4_8RDW_004
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- CGAUAAU*AC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8RDW|1|Z2|G|1255, 8RDW|1|Z2|A|1256, 8RDW|1|Z2|U|1257, 8RDW|1|Z2|A|1259, 8RDW|1|Z2|U|1635
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RDW_004 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.0811
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8RDW|1|Z2|C|1254
8RDW|1|Z2|G|1255
8RDW|1|Z2|A|1256
8RDW|1|Z2|U|1257
8RDW|1|Z2|A|1258
8RDW|1|Z2|A|1259
8RDW|1|Z2|U|1260
*
8RDW|1|Z2|A|1278
8RDW|1|Z2|C|1279
*
8RDW|1|Z2|G|1633
8RDW|1|Z2|C|1634
8RDW|1|Z2|U|1635
8RDW|1|Z2|U|1636
*
8RDW|1|Z2|A|1995
8RDW|1|Z2|G|1996
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain MB
- Large ribosomal subunit protein bL17
- Chain RF
- Large ribosomal subunit protein uL22
- Chain aA
- Large ribosomal subunit protein bL32
Coloring options: