J4_8RDW_011
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GAUC*GAC*GGAUG*CAC
- Length
- 15 nucleotides
- Bulged bases
- 8RDW|1|Z2|U|2717
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RDW_011 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.4255
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RDW|1|Z2|G|2626
8RDW|1|Z2|A|2627
8RDW|1|Z2|U|2628
8RDW|1|Z2|C|2629
*
8RDW|1|Z2|G|2657
8RDW|1|Z2|A|2658
8RDW|1|Z2|C|2659
*
8RDW|1|Z2|G|2714
8RDW|1|Z2|G|2715
8RDW|1|Z2|A|2716
8RDW|1|Z2|U|2717
8RDW|1|Z2|G|2718
*
8RDW|1|Z2|C|2752
8RDW|1|Z2|A|2753
8RDW|1|Z2|C|2754
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain IX
- Large ribosomal subunit protein uL13
- Chain Je
- Large ribosomal subunit protein uL14
Coloring options: