J4_8RJB_004

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8RJB|1|K|A|2366, 8RJB|1|K|U|2369, 8RJB|1|K|A|2370, 8RJB|1|K|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|C|2365
8RJB|1|K|A|2366
8RJB|1|K|A|2367
8RJB|1|K|A|2368
8RJB|1|K|U|2369
8RJB|1|K|A|2370
8RJB|1|K|U|2371
*
8RJB|1|K|A|2389
8RJB|1|K|G|2390
8RJB|1|K|G|2391
*
8RJB|1|K|C|2824
8RJB|1|K|A|2825
8RJB|1|K|U|2826
8RJB|1|K|G|2827
8RJB|1|K|U|2828
8RJB|1|K|U|2829
*
8RJB|1|K|A|3856
8RJB|1|K|G|3857

Current chains

Chain K

28S rRNA

Nearby chains

Chain 4

Stress-associated endoplasmic reticulum protein

Chain P

uL22

Chain R

Ribosomal protein L19

Chain d

60S ribosomal protein L31