J4_8RJC_003

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CC*GAGGGAG*UGCGCCGCGCU*GCGCACGGGG

Length

30 nucleotides

Bulged bases

8RJC|1|K|G|959, 8RJC|1|K|C|972, 8RJC|1|K|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|C|712
8RJC|1|K|C|713
*
8RJC|1|K|G|955
8RJC|1|K|A|956
8RJC|1|K|G|957
8RJC|1|K|G|958
8RJC|1|K|G|959
8RJC|1|K|A|960
8RJC|1|K|G|961
*
8RJC|1|K|U|971
8RJC|1|K|G|971|||A
8RJC|1|K|C|972
8RJC|1|K|G|973
8RJC|1|K|C|974
8RJC|1|K|C|975
8RJC|1|K|G|976
8RJC|1|K|C|977
8RJC|1|K|G|978
8RJC|1|K|C|979
8RJC|1|K|U|980
*
8RJC|1|K|G|1275
8RJC|1|K|C|1276
8RJC|1|K|G|1277
8RJC|1|K|C|1278
8RJC|1|K|A|1279
8RJC|1|K|C|1280
8RJC|1|K|G|1281
8RJC|1|K|G|1282
8RJC|1|K|G|1283
8RJC|1|K|G|1284

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain E

60S ribosomal protein L6

Chain F

Ribosomal Protein uL30

Chain e

Ribosomal protein L32