J4_8RJC_006
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GG*UGUGAA*UGGAAAG*UC
- Length
- 17 nucleotides
- Bulged bases
- 8RJC|1|K|A|2696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RJC_006 not in the Motif Atlas
- Homologous match to J4_8GLP_008
- Geometric discrepancy: 0.0981
- The information below is about J4_8GLP_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJC|1|K|G|2618
8RJC|1|K|G|2619
*
8RJC|1|K|U|2637
8RJC|1|K|G|2638
8RJC|1|K|U|2639
8RJC|1|K|G|2640
8RJC|1|K|A|2641
8RJC|1|K|A|2642
*
8RJC|1|K|U|2692
8RJC|1|K|G|2693
8RJC|1|K|G|2694
8RJC|1|K|A|2695
8RJC|1|K|A|2696
8RJC|1|K|A|2697
8RJC|1|K|G|2698
*
8RJC|1|K|U|2718
8RJC|1|K|C|2719
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain U
- Ribosomal protein L22
- Chain g
- 60S ribosomal protein L34
- Chain k
- 60S ribosomal protein L38
Coloring options: