J4_8RJC_008

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8RJC|1|K|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RJC_008 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1017

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|C|3696
8RJC|1|K|U|3697
8RJC|1|K|G|3698
*
8RJC|1|K|C|3752
8RJC|1|K|G|3753
*
8RJC|1|K|C|3771
8RJC|1|K|U|3772
8RJC|1|K|U|3773
8RJC|1|K|A|3774
8RJC|1|K|A|3775
8RJC|1|K|G|3776
8RJC|1|K|G|3777
8RJC|1|K|U|3778
8RJC|1|K|A|3779
8RJC|1|K|G|3780
*
8RJC|1|K|U|3814
8RJC|1|K|G|3815
8RJC|1|K|A|3816
8RJC|1|K|A|3817
8RJC|1|K|U|3818
8RJC|1|K|G|3819

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain n

60S ribosomal protein L41

Chain q

Transfer RNA; tRNA