J4_8RJC_009
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CUAAG*UUG*CC*GGG
- Length
- 13 nucleotides
- Bulged bases
- 8RJC|1|K|A|4234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJC|1|K|C|4231
8RJC|1|K|U|4232
8RJC|1|K|A|4233
8RJC|1|K|A|4234
8RJC|1|K|G|4235
*
8RJC|1|K|U|4289
8RJC|1|K|U|4290
8RJC|1|K|G|4291
*
8RJC|1|K|C|4318
8RJC|1|K|C|4319
*
8RJC|1|K|G|4328
8RJC|1|K|G|4329
8RJC|1|K|G|4330
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain T
- 60S ribosomal protein L21
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: