J4_8RJC_011
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GUAG*CGU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 8RJC|1|q|U|8, 8RJC|1|q|U|47, 8RJC|1|q|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RJC_011 not in the Motif Atlas
- Homologous match to J4_8VU0_001
- Geometric discrepancy: 0.1735
- The information below is about J4_8VU0_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
8RJC|1|q|G|7
8RJC|1|q|U|8
8RJC|1|q|A|9
8RJC|1|q|G|10
*
8RJC|1|q|C|25
8RJC|1|q|G|26
8RJC|1|q|U|27
*
8RJC|1|q|A|43
8RJC|1|q|A|44
8RJC|1|q|G|45
8RJC|1|q|G|46
8RJC|1|q|U|47
8RJC|1|q|C|48
8RJC|1|q|C|49
*
8RJC|1|q|G|65
8RJC|1|q|C|66
Current chains
- Chain q
- P-site tRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: