J4_8RJD_005
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8RJD|1|K|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RJD_005 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0858
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJD|1|K|G|2406
8RJD|1|K|G|2407
8RJD|1|K|U|2408
8RJD|1|K|U|2409
8RJD|1|K|C|2410
*
8RJD|1|K|G|2434
8RJD|1|K|G|2435
8RJD|1|K|U|2436
8RJD|1|K|C|2437
8RJD|1|K|A|2438
8RJD|1|K|G|2439
*
8RJD|1|K|U|2538
8RJD|1|K|C|2539
*
8RJD|1|K|G|2777
8RJD|1|K|G|2778
8RJD|1|K|C|2779
8RJD|1|K|C|2780
8RJD|1|K|G|2781
8RJD|1|K|U|2782
8RJD|1|K|A|2783
8RJD|1|K|C|2784
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain 1
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain R
- Ribosomal protein L19
- Chain X
- Large ribosomal subunit protein uL23 N-terminal domain-containing protein
- Chain g
- 60S ribosomal protein L34
- Chain h
- 60S ribosomal protein L35
- Chain j
- Ribosomal protein L37
- Chain k
- Large ribosomal subunit protein eL38
- Chain l
- 60S ribosomal protein L39-like
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
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