J4_8RPY_001

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8RPY|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RPY_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1309

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8RPY|1|A|C|268
8RPY|1|A|C|269
*
8RPY|1|A|G|370
8RPY|1|A|A|371
8RPY|1|A|G|372
8RPY|1|A|U|373
8RPY|1|A|A|374
8RPY|1|A|G|375
*
8RPY|1|A|U|399
8RPY|1|A|G|400
8RPY|1|A|A|401
8RPY|1|A|A|402
8RPY|1|A|U|403
8RPY|1|A|A|404
8RPY|1|A|U|405
8RPY|1|A|G|406
*
8RPY|1|A|C|421
8RPY|1|A|A|422
8RPY|1|A|A|423
8RPY|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28