J4_8RPY_003
3D structure
- PDB id
- 8RPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8RPY|1|A|G|1271, 8RPY|1|A|A|1272, 8RPY|1|A|U|1273, 8RPY|1|A|A|1275, 8RPY|1|A|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RPY_003 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.1009
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8RPY|1|A|C|1270
8RPY|1|A|G|1271
8RPY|1|A|A|1272
8RPY|1|A|U|1273
8RPY|1|A|A|1274
8RPY|1|A|A|1275
8RPY|1|A|A|1276
*
8RPY|1|A|U|1294
8RPY|1|A|C|1295
*
8RPY|1|A|G|1645
8RPY|1|A|C|1646
8RPY|1|A|U|1647
8RPY|1|A|U|1648
*
8RPY|1|A|A|2009
8RPY|1|A|G|2010
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain N
- Large ribosomal subunit protein bL17
- Chain S
- Large ribosomal subunit protein uL22
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