J4_8RPY_005

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8RPY|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RPY_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0612

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8RPY|1|A|U|1313
8RPY|1|A|C|1314
*
8RPY|1|A|G|1338
8RPY|1|A|G|1339
8RPY|1|A|U|1340
8RPY|1|A|G|1341
8RPY|1|A|A|1342
8RPY|1|A|G|1343
*
8RPY|1|A|C|1404
8RPY|1|A|U|1405
*
8RPY|1|A|A|1597
8RPY|1|A|A|1598
8RPY|1|A|U|1599
8RPY|1|A|C|1600
8RPY|1|A|G|1601
8RPY|1|A|U|1602
8RPY|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain T

Large ribosomal subunit protein uL23