J4_8RPZ_001

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8RPZ|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RPZ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1262

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8RPZ|1|A|C|268
8RPZ|1|A|C|269
*
8RPZ|1|A|G|370
8RPZ|1|A|A|371
8RPZ|1|A|G|372
8RPZ|1|A|U|373
8RPZ|1|A|A|374
8RPZ|1|A|G|375
*
8RPZ|1|A|U|399
8RPZ|1|A|G|400
8RPZ|1|A|A|401
8RPZ|1|A|A|402
8RPZ|1|A|U|403
8RPZ|1|A|A|404
8RPZ|1|A|U|405
8RPZ|1|A|G|406
*
8RPZ|1|A|C|421
8RPZ|1|A|A|422
8RPZ|1|A|A|423
8RPZ|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28