J4_8RQ0_001

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8RQ0|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RQ0_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1262

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8RQ0|1|A|C|268
8RQ0|1|A|C|269
*
8RQ0|1|A|G|370
8RQ0|1|A|A|371
8RQ0|1|A|G|372
8RQ0|1|A|U|373
8RQ0|1|A|A|374
8RQ0|1|A|G|375
*
8RQ0|1|A|U|399
8RQ0|1|A|G|400
8RQ0|1|A|A|401
8RQ0|1|A|A|402
8RQ0|1|A|U|403
8RQ0|1|A|A|404
8RQ0|1|A|U|405
8RQ0|1|A|G|406
*
8RQ0|1|A|C|421
8RQ0|1|A|A|422
8RQ0|1|A|A|423
8RQ0|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28