J4_8RQ2_001

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8RQ2|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RQ2_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1262

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8RQ2|1|A|C|268
8RQ2|1|A|C|269
*
8RQ2|1|A|G|370
8RQ2|1|A|A|371
8RQ2|1|A|G|372
8RQ2|1|A|U|373
8RQ2|1|A|A|374
8RQ2|1|A|G|375
*
8RQ2|1|A|U|399
8RQ2|1|A|G|400
8RQ2|1|A|A|401
8RQ2|1|A|A|402
8RQ2|1|A|U|403
8RQ2|1|A|A|404
8RQ2|1|A|U|405
8RQ2|1|A|G|406
*
8RQ2|1|A|C|421
8RQ2|1|A|A|422
8RQ2|1|A|A|423
8RQ2|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28