J4_8RXH_001

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CUC*G(A2M)GUAG*UCAAGUUG*CAAAG

Length

22 nucleotides

Bulged bases

8RXH|1|L1|U|335, 8RXH|1|L1|U|336

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RXH|1|L1|C|111
8RXH|1|L1|U|112
8RXH|1|L1|C|113
*
8RXH|1|L1|G|304
8RXH|1|L1|A2M|305
8RXH|1|L1|G|306
8RXH|1|L1|U|307
8RXH|1|L1|A|308
8RXH|1|L1|G|309
*
8RXH|1|L1|U|330
8RXH|1|L1|C|331
8RXH|1|L1|A|332
8RXH|1|L1|A|333
8RXH|1|L1|G|334
8RXH|1|L1|U|335
8RXH|1|L1|U|336
8RXH|1|L1|G|337
*
8RXH|1|L1|C|354
8RXH|1|L1|A|355
8RXH|1|L1|A|356
8RXH|1|L1|A|357
8RXH|1|L1|G|358

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Putative 60S ribosomal protein L13

Chain LM

Ribosomal protein L15

Chain La

Putative 60S ribosomal protein L35

Chain Li

Putative 60S Ribosomal protein L36