J4_8RXH_003
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CAAAGAU*AU*ACAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8RXH|1|L1|A|1542, 8RXH|1|L1|G|1545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RXH_003 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.2121
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_34212.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RXH|1|L1|C|1541
8RXH|1|L1|A|1542
8RXH|1|L1|A|1543
8RXH|1|L1|A|1544
8RXH|1|L1|G|1545
8RXH|1|L1|A|1546
8RXH|1|L1|U|1547
*
8RXH|1|L1|A|1580
8RXH|1|L1|U|1581
*
8RXH|1|L2|A|60
8RXH|1|L2|C|61
8RXH|1|L2|A|62
8RXH|1|L2|U|63
*
8RXH|1|L2|A|598
8RXH|1|L2|G|599
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L4
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Putative 60S ribosomal protein L19
- Chain LT
- Putative 60S ribosomal protein L17
- Chain Le
- Putative 60S ribosomal subunit protein L31
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