J4_8RXH_005
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UU*A(OMG)UUGU*AU*GA(OMC)CGUA
- Length
- 17 nucleotides
- Bulged bases
- 8RXH|1|L1|U|1628
- QA status
- Modified nucleotides: OMG, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RXH|1|L1|U|1600
8RXH|1|L1|U|1601
*
8RXH|1|L1|A|1625
8RXH|1|L1|OMG|1626
8RXH|1|L1|U|1627
8RXH|1|L1|U|1628
8RXH|1|L1|G|1629
8RXH|1|L1|U|1630
*
8RXH|1|L1|A|1769
8RXH|1|L1|U|1770
*
8RXH|1|L2|G|12
8RXH|1|L2|A|13
8RXH|1|L2|OMC|14
8RXH|1|L2|C|15
8RXH|1|L2|G|16
8RXH|1|L2|U|17
8RXH|1|L2|A|18
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L3
- SR1_chain_3
- Chain L7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LQ
- Putative 60S ribosomal protein L19
- Chain LV
- Putative 60S ribosomal protein L23a
- Chain La
- Putative 60S ribosomal protein L35
- Chain Lh
- Putative 60S ribosomal protein L34
- Chain Lk
- Putative ribosomal protein L38
- Chain Ll
- Putative 60S ribosomal protein L39
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