3D structure

PDB id
8S95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Poliovirus (type 1 Mahoney) cloverleaf RNA with tRNA scaffold
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AUAG*CAG*CGGGUCC*GU
Length
16 nucleotides
Bulged bases
8S95|1|C|U|8, 8S95|1|C|U|127, 8S95|1|C|C|128
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_70449.27
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
53

Unit IDs

8S95|1|C|A|7
8S95|1|C|U|8
8S95|1|C|A|9
8S95|1|C|G|10
*
8S95|1|C|C|25
8S95|1|C|A|26
8S95|1|C|G|27
*
8S95|1|C|C|123
8S95|1|C|G|124
8S95|1|C|G|125
8S95|1|C|G|126
8S95|1|C|U|127
8S95|1|C|C|128
8S95|1|C|C|129
*
8S95|1|C|G|145
8S95|1|C|U|146

Current chains

Chain C
Lysine tRNA scaffold,Poliovirus cloverleaf RNA

Nearby chains

No other chains within 10Å

Coloring options:

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