J4_8SCB_006

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

8SCB|1|5|A|2366, 8SCB|1|5|U|2369, 8SCB|1|5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SCB|1|5|OMC|2365
8SCB|1|5|A|2366
8SCB|1|5|A|2367
8SCB|1|5|A|2368
8SCB|1|5|U|2369
8SCB|1|5|A|2370
8SCB|1|5|U|2371
*
8SCB|1|5|A|2389
8SCB|1|5|G|2390
8SCB|1|5|G|2391
*
8SCB|1|5|OMC|2824
8SCB|1|5|A|2825
8SCB|1|5|U|2826
8SCB|1|5|G|2827
8SCB|1|5|U|2828
8SCB|1|5|U|2829
*
8SCB|1|5|A|3856
8SCB|1|5|G|3857

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain P

uL22

Chain R

Ribosomal protein L19

Chain d

eL31