J4_8SP9_001

3D structure

PDB id

8SP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Coxsackievirus B3 (CVB3) Cloverleaf RNA with tRNA scaffold

Experimental method

X-RAY DIFFRACTION

Resolution

2.92 Å

Loop

Sequence

AUAG*CAG*CGGGUCC*GU

Length

16 nucleotides

Bulged bases

8SP9|1|C|U|8, 8SP9|1|C|U|124, 8SP9|1|C|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.27

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

53

Unit IDs

8SP9|1|C|A|7
8SP9|1|C|U|8
8SP9|1|C|A|9
8SP9|1|C|G|10
*
8SP9|1|C|C|25
8SP9|1|C|A|26
8SP9|1|C|G|27
*
8SP9|1|C|C|120
8SP9|1|C|G|121
8SP9|1|C|G|122
8SP9|1|C|G|123
8SP9|1|C|U|124
8SP9|1|C|C|125
8SP9|1|C|C|126
*
8SP9|1|C|G|142
8SP9|1|C|U|143

Current chains

Chain C

tRNA scaffold,CVB3 Cloverleaf RNA

Nearby chains