J4_8SYL_001

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8SYL|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8SYL_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1163

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8SYL|1|A|C|268
8SYL|1|A|C|269
*
8SYL|1|A|G|370
8SYL|1|A|A|371
8SYL|1|A|G|372
8SYL|1|A|U|373
8SYL|1|A|A|374
8SYL|1|A|G|375
*
8SYL|1|A|U|399
8SYL|1|A|G|400
8SYL|1|A|A|401
8SYL|1|A|A|402
8SYL|1|A|U|403
8SYL|1|A|A|404
8SYL|1|A|U|405
8SYL|1|A|G|406
*
8SYL|1|A|C|421
8SYL|1|A|A|422
8SYL|1|A|A|423
8SYL|1|A|G|424

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28