J4_8SYL_006

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8SYL|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8SYL_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0598

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8SYL|1|A|U|1313
8SYL|1|A|C|1314
*
8SYL|1|A|G|1338
8SYL|1|A|G|1339
8SYL|1|A|U|1340
8SYL|1|A|G|1341
8SYL|1|A|A|1342
8SYL|1|A|G|1343
*
8SYL|1|A|C|1404
8SYL|1|A|U|1405
*
8SYL|1|A|A|1597
8SYL|1|A|A|1598
8SYL|1|A|U|1599
8SYL|1|A|C|1600
8SYL|1|A|G|1601
8SYL|1|A|U|1602
8SYL|1|A|A|1603

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L23