J4_8SYL_012

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8SYL|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8SYL_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2204

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8SYL|1|a|G|115
8SYL|1|a|A|116
8SYL|1|a|G|117
8SYL|1|a|U|118
8SYL|1|a|A|119
8SYL|1|a|A|120
8SYL|1|a|U|121
8SYL|1|a|G|122
*
8SYL|1|a|U|239
8SYL|1|a|G|240
*
8SYL|1|a|C|286
8SYL|1|a|U|287
8SYL|1|a|A|288
8SYL|1|a|G|289
*
8SYL|1|a|C|311
8SYL|1|a|C|312

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17